- 310 registry:skill items, 1528 files, 7 categories (hub tags) - registry.json generated by @kortix/registry buildRegistry - nested SKILL.md in sn-da-* renamed SUBSKILL.md (no phantom skills) - provenance + licenses: SOURCES.md
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HPO (Human Phenotype Ontology)
Base URL
https://ontology.jax.org/api/hp
Auth
No API key required.
Important: URL-encode colons in HP IDs — HP:0001250 becomes HP%3A0001250
Key Endpoints
| Endpoint | Description |
|---|---|
/hpo/search?q={query}&max={n} |
Search HPO terms by name |
/hpo/term/{id} |
Term details |
/hpo/term/{id}/genes |
Genes associated with a phenotype |
/hpo/term/{id}/diseases |
Diseases associated with a phenotype |
/hpo/term/{id}/children |
Child terms in hierarchy |
/hpo/term/{id}/parents |
Parent terms |
/hpo/gene/{gene_id} |
Phenotypes for a gene (Entrez ID) |
/hpo/disease/{disease_id} |
Phenotypes for a disease (OMIM/ORPHA) |
Example Calls
# Search for "seizure"
https://ontology.jax.org/api/hp/hpo/search?q=seizure&max=5
# Term details for Seizure
https://ontology.jax.org/api/hp/hpo/term/HP%3A0001250
# Genes associated with Seizure
https://ontology.jax.org/api/hp/hpo/term/HP%3A0001250/genes
# Diseases for Seizure
https://ontology.jax.org/api/hp/hpo/term/HP%3A0001250/diseases
# Phenotypes for SCN1A (Entrez 6323)
https://ontology.jax.org/api/hp/hpo/gene/6323
Response Format
JSON. Terms: id, name, definition, synonyms. Gene associations: genes[] with geneId, geneSymbol. Diseases: diseases[] with diseaseId, diseaseName.
Rate Limits
No published limits. Bulk annotation files at https://hpo.jax.org/data/annotations