manus-skills/.kortix/opencode/skills/data/database-lookup/references/monarch.md
zhukang 1c7abd81d1 All 310 Manus skill-hub community skills as a Kortix marketplace registry
- 310 registry:skill items, 1528 files, 7 categories (hub tags)
- registry.json generated by @kortix/registry buildRegistry
- nested SKILL.md in sn-da-* renamed SUBSKILL.md (no phantom skills)
- provenance + licenses: SOURCES.md
2026-09-15 13:37:20 +08:00

1.4 KiB

Monarch Initiative API

Base URL

https://api.monarchinitiative.org/v3/api

Auth

No API key required.

Key Endpoints

Endpoint Description
/search?q={query} Text search across all entities
/autocomplete?q={prefix} Autocomplete entity names
/entity/{id} Entity details (gene, disease, phenotype)
/entity/{id}/associations Associations for an entity
/entity/{id}/associations?category={cat} Filtered associations

Entity ID Prefixes

  • MONDO: — diseases (e.g. MONDO:0007947)
  • HP: — phenotypes (e.g. HP:0001250)
  • HGNC: — genes (e.g. HGNC:3603)
  • NCBIGene: — genes (e.g. NCBIGene:7157)

Association Categories

biolink:GeneToPhenotypicFeatureAssociation, biolink:DiseaseToPhenotypicFeatureAssociation, biolink:GeneToDiseaseAssociation

Example Calls

# Search for Marfan syndrome
https://api.monarchinitiative.org/v3/api/search?q=Marfan+syndrome&limit=5

# Entity details for a disease
https://api.monarchinitiative.org/v3/api/entity/MONDO:0007947

# Gene-to-phenotype for FBN1
https://api.monarchinitiative.org/v3/api/entity/HGNC:3603/associations?category=biolink:GeneToPhenotypicFeatureAssociation&limit=10

Response Format

JSON. Search: items[] with id, name, category. Associations: items[] with subject, predicate, object, publications.

Rate Limits

No published limits. Be reasonable.